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- What is the
current Monod Desktop version number?
- What
are the changes bundled with Monod
v1.5.3.5?
- What
are the changes bundled with Monod
v1.5.3.4?
- What
are the changes bundled with Monod
v1.5.3.3?
- What
are the changes bundled with Monod
v1.5.3.2?
- What
are the changes bundled with Monod
v1.5.3.1?
- What
are the changes bundled with Monod
v1.5.3?
- What
are the changes bundled with Monod
v1.5.2.6?
- What
are the changes bundled with Monod
v1.5.2.4?
- What are the changes bundled with Monod
v1.523?
- What are the changes bundled with Monod
v1.522?
- What are the changes bundled with Monod
v1.52?
- What are the changes bundled with Monod
v1.51?
- What are the changes bundled with Monod
v1.46?
- What are the changes bundled with Monod
v1.45?
- What are the changes bundled with Monod
v1.44?
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What is the current Monod
Desktop version number?
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Monod Desktop will not have its
own release version number until it is out of the prototype
phase. During the prototype phase, it is bundled with the
(web-based) Monod release.
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| What are the changes bundled with Monod
v1.5.3.5 (Sept 10, 2004) |
- Changes
- Changed MonodSessionSBML2ImporterBean from stateful to
stateless session bean
- Retired old SBML parser and replaced all references to
the old SBML parser to the version checked-in in v1.5.3.4
- Bug fixes
- For the "Add note annotation" and "Add literature
annotation" popup menu items, fixed the problem so that the
annotation will be applied to all the annotatees
when "appending to the annotatee list".
- For "Add literature annotation" with an existing
literature (in Monod), modified code to provide better user
notification when the pubmed id validation fails.
- For model import, fixed occasional reaction persistence
error.
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| What are the changes bundled with Monod
v1.5.3.4 (Aug 13, 2004) |
- Changes
- Updated SBML parser
- For the exported annotated model sbml file, changed the
content packaging for <notes> and <annotation>
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| What are the changes bundled with Monod
v1.5.3.3 (Aug 10, 2004) |
- Changes
- Be able to export model to local file system independent
of the Dashboard
- Be able to launch web monod to update permission for
species, process, and model if user is authorized to do so
- Be able to drag-and-drop an annotatee from the Note
Detail page to the Note Annotation page and the Literature Annotation
page
- Added "Add note annotation" button to Note Detail: Note
Annotator page
- Added "Add literature annotation" button to Note Detail:
Literature Annotator page
- For the "Add note annotation" popup menu item, enhanced
functionality to append to annotatee list if the note annotation
page is already open
- For the "Add literature annotation" popup menu item,
enhanced functionality to
append to annotatee list if the literature annotation page is already
open
- For the note summary, add popup menu item "Apply as
Annotator" as an alternative to drag-and-drop
- For the literature summary, add popup menu item "Apply as
Annotator" as an alternative to drag-and-drop
- Added View -> Navigator to the main menu
- Bug fixes
- Fixed server problem for failure to add a new
literature on the Literature Annotation page when using the journal page
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| What are the changes bundled with Monod
v1.5.3.2 (July 30, 2004) |
- Changes
- Updated documentation
- Added error message for note detail retrieval failure
- Add client threading for the note detail page
- Bug fixes
- Fixed permission error when user tries to update a note
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| What are the changes bundled with Monod
v1.5.3.1 (July 19, 2004) |
- Changes
- Added "task in progress" dialog
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| What are the changes bundled with Monod
v1.5.3 (July 16, 2004) |
- Changes
- Improved error notification for data retrieval or model
import failure
- Fixed model import errors for new processes
- Enabled default permission preferences administration for
users with no prior preference settings.
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| What are the changes bundled with Monod
v1.5.2.6 (July 15, 2004) |
- Changes
- Be able to launch web monod to administer user default
permission preferences (under main menu -> preferences)
- Enable (main menu -> preferences -> web browser
path) at all time
- Be able to launch web monod to update permission for
note, literature and file.
- Remove "No data found" message dialog for automatic data
retrieval (e.g., for the visible sub-tab in the data miner)
- Import
- Be able to import sbml level 2 model (main menu ->
import)
- Persist note and annotation in sbml import
- Dashboard
- Be able to import large sbml model
- Be able to export raw SBML with monod annotation
embedded
- Bug fixes
- Fixed occasional concurrent session bean calls
- Documentation
- Add faqs.html for frequently asked questions
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| What are the changes bundled with Monod
v1.5.2.4 (June 16, 2004) |
- Changes
- Added readme.html file
- Bundled *.nbm file
with release
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| What are the changes bundled with Monod
v1.523 (June 15, 2004) |
- Changes
- Literature creation
- (MND-93) Increase column sizes for the PAPER and AUTHOR
tables
for literature creation. Refer to the release notes for instructions.
- Note Details page
- Note Details page now allows users to save the note as
either new and update the existing note
- Fix CollectionDeserializer exception when remove
literature annotation on the Note Detail page
- Annotation with Note page
- Fix the "Attach File" option on the Annotating with
Note pge.
- Dashboard-enablement
- Be able to import model
- Be able to export raw SBML annotation
- Data Miner
- For models that do not have graphical display
information, web Monod will be launched to view them textually.
- Data Miner sub-tab data retrieval is now run on a
separate thread
- Literature creation and annotation are now run on a
separate thread
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| What are the changes bundled with Monod
v1.522 (June 2004) |
- Changes
- Client-side only change for the note detail page
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What are the changes bundled with Monod
v1.52 (May 2004)
|
- Changes
- Be able to resize the "Annotating with Note" page
- In the Data Miner, when the keyword query field is empty
and the user presses submit, it will default to "*"
- In the "Annotating with Note" and the "Note Details"
pages, the note text UI has been re-designed to allow
reading/editing the formatted and unformatted contents easily
- User can double-click on a row in any table to view
details
- Guest can login to MSI Monod Desktop
- Login is run on a separate thread
- Query submission is run on a separate thread
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What are the changes bundled with Monod v1.51 (April
2004)?
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- Changes
- Search on note
- Edit note annotation
- Annotate with literature
- Search on literature
- Create literature
- Miscellaneous enhancement
- Automatic retrieval of supporting data in the data miner
- Confirmation dialog for any deletion
- Option to save a note as new or as update at time of
note annotation
- Known bugs
- Drag-and-drop may occasionally stop working (i.e., the
application does not recognize the drag action). Troubleshooting
and workaround for this problem are currently underway. For the
time being, the workaround is to quit the application and start over.
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| What are the changes bundled with Monod v1.46 (Dec
2003)? |
- Annotate species, model, process, effect and/or note with
notes
- Annotate multiple Monod data items in one operation
- Attach multiple files to an annotation in one operation
- Annotate with existing annotation
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| What are the changes bundled with Monod v1.45 (Oct
14th, 2003)? |
- The log-in window now supports manual entry of Monod
Instance info (e.g.,
monod.something.org:8888).
- The Workspace Navigator and Model Editor now support the
'view bioProcess data details' functionality .
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What are the changes bundled with Monod v1.44 (Oct
8th, 2003)?
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- Initial release of Monod Desktop prototype.
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